Scaffold 2.1.1
The industry standard MS/MS meta-analysis tool
- Display a complete, experiment-wide view of identified proteins in your experiment.
- Compare results from Spectrum Mill, Mascot, SEQUEST®, Phenyx, OMSSA and X!Tandem.
New Search Engine Support: Spectrum Mill
Scaffold 2.1.1 Software now supports the processing of search results from Agilent Technologies' Spectrum Mill search engine. Spectrum Mill performs high-throughput searches of MS and MS/MS test results. Researchers who load Spectrum Mill data files into Scaffold can now compare Spectrum Mill results with Mascot, SEQUEST™, Phenyx, OMSSA, and X!Tandem search engines.
New Feature: Enhanced Support for Mascot Server
Browse Mascot server from within Scaffold. No longer need to manually download Mascot files to your local disk. Edit > Preferences > Mascot Server.
New Feature: Expanded Support for Mascot 2.2 Files
New Mascot parser removes limitation, enhances support for Mascot 2.2 files.
New Feature: Add data in sub folders as new biological samples.
Auto queuing is useful working with 2-D gel data.
New Search Engine Support: OMSSA
The Open Mass Spectrometry Search Algorithm [OMSSA] is free and in the public domain.
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