SILAC Quantitative and Statistical Analysis in Scaffold Q+S: Quickly Compare Relative Multiplex Samples Across Many Experiments.

Construct iTRAQ and TMT reports for any Scaffold data set. Construct SILAC reports for: Mascot Distiller (XMLs); Proteome Discoverer (MSFs); and MaxQuant/Andromeda (Combined DIR)

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• Scaffold 3.4 >> Visualize and Validate Complex MS/MS Proteomics Experiments

 

• Products Release Notes >> Check out new features and current bug fixes!

 

• Quick Start Guide >> Download our Products' Quick Start Guide

Scaffold has proven its performance in over 400 academic, public and private research facilities around the world with the ability to display a visual comparison of the proteins found by multiple search engines across all the samples of an experiment.

• Visualize >> compare multiple samples and categories with advanced statistical analysis.


• Validate >> Identify proteins by validating MS/MS data from multiple search engines.


• Collaborate >> Organize and share MS/MS experimental data with clients or colleagues.
  

  >> Confident PTM Site Assignment

Calculate site assignments with confidence for any type of PTM: Site specific PTM confidence is calculated based on Ascore, the standard in phosphorylation site assignment.

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Try the quantitation module for Scaffold!

"By presenting reporter ions visually, Scaffold Q+ software allows scientists to more easily comprehend the complex data presented in multiple iTRAQ and TMT experiments."