Leading edge analytics for mass spectrometry
Welcome to the Scaffold Software™ community
We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.
Compiling individual data sets to build a proteome database and add statistical analysis to compiled data sets required months of tedium using current free-ware and add-on utilities. We recently duplicated these efforts using Scaffold and were able to compile our database with statistical analysis within hours. Further, the data loading structure of Scaffold is dynamic, thus as we gain information on expression profiles we can update our proteome database. File export functions then allow us to rapidly annotate this proteome database with descriptors (such as structural and functional annotations) of the proteins in the database. In summary, Scaffold has become a significant asset to our research and reagent discovery program.
Karen Dobos, Colorado State University
Core Facilities
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need an easy way to share results with your customers?
Researchers
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.
