Are your LC-MS/MS experiments reproducible? Proteome Software released its new online LC-MS/MS Quality Control tool , MassQC. For a 30-day free trial, visit our subscribe page.

Scaffold Visualizes and Validates Complex MS/MS Proteomics Experiments

Scaffold has proven its performance in 250 mass spectromety proteomics labs around the world with the ability to display a visual comparison of the proteins found by Mascot*/Sequest*/X! Tandem*/Phenyx* searches across all the samples of an experiment.

Visualize
View a graphic comparison of protein expression between samples.

Validate
Identify proteins from MS/MS data by validating Mascot*/Sequest*/X! Tandem* Phenyx* searches.

Collaborate
Organize and share key MS/MS data with colleagues

Learn more about Scaffold software.

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Current news: See the MassQC press release!

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MassQC is an online Quality Control tool that helps you achieve more reproducible LC-MS/MS experiments. MassQC improves reproducibility by examining repeated, standard runs for a small number of known proteins, and covers both width and breadth of your LC-MS system performance. Evaluate MassQC today at www.massqc.com.

Try the new quantitation module for Scaffold!

"By presenting reporter ions visually, Scaffold Q+ software allows scientists to more easily comprehend the complex data presented in multiple iTRAQ and TMT experiments."