Protein Search Tools
In order to use these search tools in Scaffold Software, you'll need to follow the links below and agree to the respective licensing terms. You can download and install the software using the links below, as well.
MSFragger
Download: Version 3.5
X! Tandem
Download: Version ALANINE (2017.02.01)
For more information about configuring MSFragger to work with Scaffold, check out the Help Center article, Running MSFragger through Scaffold
For additional information on how to search using X! Tandem, Running X! Tandem through Scaffold
Core Facilities
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need an easy way to share results with your customers?
Researchers
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.
