VISUALIZE

View a graphic comparison of protein expression between samples. Scaffold displays a complete, experiment-wide view of the proteins identified in a tandem mass spectrometry experiment.

The side-by-side display of all the samples allows you to understand which proteins are differentially expressed. Protein identification results are displayed as probability scores, allowing you to balance the number of proteins and the confidence level of each identification. Automatic annotation of the proteins aids you in interpreting the biological relevance of your data.

VALIDATE

Identify proteins from MS/MS data by validating Mascot*/Sequest*/X! Tandem*/Phenyx* searches. Scaffold uses proven statistical algorithms to calculate the probability that proteins are actually in your biological samples. Detailed results help detect false positives by allowing you to focus on a protein and examine the peptide and spectra evidence supporting the identification.

COLLABORATE

Organize and share key MS/MS data with colleagues. With its free viewer, Scaffold makes it easy to share experimental results with colleagues. Scaffold also helps you prepare for publication, by capturing the information proteomics journals require in a paper’s methods section.

Download Scaffold

Download Scaffold 2.0 and try it today.

Scaffold Price

$5.995
$4,995 academic discount price

Walk Through A Flash Demo

See for yourself why Scaffold Software is such a useful tool. Four animated demos show you how Scaffold identifies and evaluates proteins. <MORE>

Read an independent guide to Scaffold

The Proteomics Shared Resource facility at Oregon Health & Science University created an guide to using Scaffold.<MORE>

Proteus-Analytics

Scaffold combined with Genologics' Proteus LIMS makes a high throughput proteomics pipeline.<MORE>

Sorcerer and Scaffold

Scaffold is a component of the Sage-N Research's Sorcerer integrated data appliance.<MORE>