Scaffold DIA
Look and Feel of Scaffold, Power of DIA
Search raw DIA data in library-free mode with PTM support, against various DDA library formats, Prosit predictions, or sample-specific DIA-only custom libraries
All major vendor instruments supported, including Thermo, Bruker timsTOF with dia-PASEF, Sciex, and Agilent
Import and review results from Proteome Discoverer (CHIMERYS), DIA-NN, Spectronaut, PaSER, and PEAKS
Track quantitative trends with advanced statistical analysis, built-in heatmaps, and PCA and monitor data quality with QC charts
Share data using the free Scaffold DIA Viewer, Excel-formatted exports, and publication-quality images
Download (current version: 6.0.0)
Release Notes
Core Facilities
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need an easy way to share results with your customers?
Researchers
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.
