Leading edge analytics for mass spectrometry

Welcome to the Scaffold Software community

We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.

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We [use] Scaffold to assemble Sequest, Mascot, and GPM results ... of human plasma ... Scaffold has really been useful to pool search results and discriminate between false and true positives.

Pierre Gagne, CHUL Research Center