Leading edge analytics for mass spectrometry

Welcome to the Scaffold Software community

We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.

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We recently started using Scaffold DIA as part of our quantitative proteomic workflow. This software is a powerful research tool for identifying relative protein abundance differences between biological samples. What makes this software even more powerful is that the Proteome Software staff is always available to assist in setting up MS methods, customizing databases or to answer questions about how to utilize Scaffold DIA features for evaluating experimental data.

Michael Brad Strader, Food and Drug Administration