The Look and Feel of Scaffold, the Power of DIA
Search raw DIA data against various DDA library formats, Prosit predictions, or sample-specific DIA-only custom libraries
Load data* from major vendor instruments, including Thermo, Sciex, and Agilent
Track quantitative trends with advanced statistical analysis, built-in heatmaps, and PCA
Share data using the free Scaffold DIA Viewer, Excel-formatted exports, and publication-quality images
Download (current version: 3.0.1)*Windows is required to process vendor-formatted raw files
- Added support for unique peptide counting
- Added context menu option for showing only certain fragment ion series in the fragment chromatogram chart
- Added an exclusivity column to the Samples view
- Added a count of data and reference files in the workflow dialog
- Scaffold DIA release notes
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need a free and easy way to share results with your customers?
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.