Protein Search Tools

In order to use these search tools in Scaffold Software, you'll need to follow the links below and agree to the respective licensing terms. You can download and install the software using the links below, as well.

For more information about configuring MSFragger to work with Scaffold, check out the Help Center article, Running MSFragger through Scaffold

For additional information on how to search using X! Tandem, Running X! Tandem through Scaffold