Leading edge analytics for mass spectrometry

Welcome to the Scaffold Software community

We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.


[Scaffold] Elements has allowed us to perform fast identification and relative quantification of high resolution shotgun metabolomics data using fragmentation spectral libraries which has opened up a new area of research and core service in our lab. We typically lean towards targeted metabolomics by SRM since untargeted metabolomics has been a challenge because intact mass data alone is never enough for confident metabolite ID.

John Asara, Harvard Medical School