Leading edge analytics for mass spectrometry

Welcome to the Scaffold Software community

We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.


Scaffold has been a great investment for my facility. It ... allows clients that may not have a deep understanding of mass spectrometry ... to understand our results, [and] it has contributed greatly to ongoing research in the facility. Scaffold is a bargain for what it does, and the people at Proteome Software have been very helpful and supportive of our needs.

Brett Phinney, University of California, Davis