Leading edge analytics for mass spectrometry

Welcome to the Scaffold Software community

We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.


Our group produces large amounts of data that is difficult to control, catalogue and analyse. To carry out shotgun proteomics techniques we had to load the MS/MS data manually, which proved both labour intensive and error prone. We tested Scaffold and found that making comparisons between our samples was simple and fast. The most impressive part was that we didn't need to access the help function once, as the software was so intuitive.

Kelvin Cain, MRC Toxicology Unit