Leading edge analytics for mass spectrometry
Welcome to the Scaffold Software™ community
We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.
After using Scaffold for several months now, I have to say that I have been very impressed with its ease of use, robust features, and stability. Since I am doing several replicate experiments using LC/MS/MS, I generate a substantial amount of spectra, and I especially appreciate Scaffold's ability to easily compare proteins/peptides across multiple samples. Also, since I prefer to inspect and evaluate as many MS/MS spectra as possible, Scaffold's "Spectrum" view makes it easy to quickly evaluate the quality of the spectra, while at the same time providing detailed peak labeling if more careful inspection is required.
Todd Greco, Princeton University
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need a free and easy way to share results with your customers?
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.