Scaffold PTM

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Illuminating the World of Protein Post Translational Modifications

Evaluate modification site assignment confidence using Ascore and Ascore-derived probabilities

Annotate motifs reported in the literature and associate specific enzymes and kinases with PTM sites

Export quantitative data from Scaffold Q+S and analyze it at the modsite level in Scaffold PTM

Assess the significance of differences between modified and unmodified intensities using statistical testing

Download (current version: 4.0.1)

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Release Notes

  • Updated colors, icons, and GUI look-and-feel for Scaffold PTM 4.0
  • Updated to using new licensing system
  • Fixed an incorrect warning about saved scores for multiply-modified peptides
  • Fixed a bug that could result in using the wrong summarization level when switching tabs in the Quant view
  • Scaffold PTM release notes