Scaffold LFQ

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Simple, Experiment-driven Quantitative Analysis for Proteomics

Combine multiple complex Scaffold experiments, or directly load Mascot or PEAKS mzIdentML files

Quantify differential expression using spectral counts or precursor intensities and test for statistical significance

Analyze your data using PCA and heatmaps, an ideal exploratory environment with flexible organization

Share data using the free Scaffold LFQ Viewer or exportable reports and graphics

Download (current version: 4.0.1)

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Release Notes

  • Added a "clear" button to the advanced filter dialog
  • Added tooltips to the column header in the Proteins view peptides table
  • Added support for FDR thresholding of MZID data using Percolator PEP or Byonic scores
  • Added a helpful message when an already-expired key is activated
  • Scaffold LFQ release notes