Scaffold Quant
Experiment-driven Labeled and Label-free Quantitative Analysis
Analyze iTRAQ/TMT data from Proteome Discoverer, Mascot, or PEAKS mzIdentML files or label-free/isobaric-labeled samples from Scaffold
Quantify differential expression and test for statistical significance
Normalize, roll-up, and interpret biological differences and find sources of technical variation at multiple levels
Scaffold Quant is our new Quantitative Platform. Check out Scaffold Q+S for the previous generation software
Download (current version: 5.0.3)
Release Notes
Core Facilities
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need a free and easy way to share results with your customers?
Researchers
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.