Proteogenomics: genomics and proteomics
Generation of search databases from user-supplied genomic variant call data in VCF format for sample- or cohort-specific searching, also compatible with COSMICTM (using QUILTS)
The use of dbSNP and ClinVar as pre-built search databases
Integration of Comet as a search engine
The integration of Percolator for FDR re-scoring based on important features of the data
A powerful new variant scoring system for discrimination of variant peptide spectra from close homologs
Spectrum visualizations for manual validation
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need an easy way to share results with your customers?
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.